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Category Archives: Lab Publications
New paper from Eisen lab: Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes KMG-I project
A new paper of possible interest discussing one of the new phases of the GEBA Genomic Encyclopedia of Bacteria and Archaea project. Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes KMG-I project | Kyrpides | Standards in … Continue reading
Quick post here. This paper came out a few months ago but it was not freely available so I did not write about it (it is in PNAS but was not published with the PNAS Open Option — not my … Continue reading
A lot of new papers from people in the lab in the last month or so. See below for details of some of them: PLOS ONE: Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices from Jenna Morgan Lang, Aaron … Continue reading
Just received from Biomed Central and thought some people might be interested in some of the ways they try to help you gather metrics about your papers. Dear Prof Eisen, We thought you might be interested to know how many … Continue reading
New paper out involving the lab. The lead author is Morgan Langille, who was a post doc in the lab and is now at Dalhausie Dalhousie University. The paper describes a tool for creation and maintenance of a local genome sequence … Continue reading
New paper from lab: Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila
A new paper in which the lab was involved has been published recently (just found it though it is not in Pubmed yet): Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophil a. It was a collaboration between Kathy Collins, … Continue reading
New publication from members of the lab in Nucleic Acids Research: A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq. Congrats. Gonna have to make some new jam …
A new paper is out from the lab: PLoS ONE: Accounting For Alignment Uncertainty in Phylogenomics. It describes the “Zorro” software for automated alignment masking. Abstract: Uncertainty in multiple sequence alignments has a large impact on phylogenetic analyses. Little has been … Continue reading
New publication from the lab: Assemblathon 1: A competitive assessment of de novo short read assembly methods
Aaron Darling from the lab is an author on a new paper just published: Assemblathon 1: A competitive assessment of de novo short read assembly methods.