Category Archives: Lab Publications

Manuscript preprint now online – Phinch data visualization framework

The preprint for the Phinch software paper is now online (one of my Legacy Eisen Lab projects) Please enjoy the PDF on bioRxiv while we patiently wait for the manuscript to go through the peer review process: Bik, H.M. and … Continue reading

Posted in Lab Publications | Tagged , , , , | Leave a comment

New paper from Holly Ganz: Interactions between Bacillus anthracis and Plants May Promote Anthrax Transmission

Holly Ganz is first author on a new paper from her work she did before joining the lab: PLOS Neglected Tropical Diseases: Interactions between Bacillus anthracis and Plants May Promote Anthrax Transmission.

Posted in Lab Publications | Tagged , , | Leave a comment

New “data paper” from the lab on the draft genome of Tatumella sp. isolated from Drosophila suzukii larvae

See: Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae. Congrats to all involved: Madison Dunitz, Pamela James, Guillaume Jospin, David Coil and Angus Chandler.  Getting data out there to the community and writing up … Continue reading

Posted in Lab Publications | Leave a comment

New EisenLab paper: PhyloSift: phylogenetic analysis of genomes and metagenomes [PeerJ]

New paper from people in the Eisen lab (and some others): PhyloSift: phylogenetic analysis of genomes and metagenomes [PeerJ].  This project was coordinated by Aaron Darling, who was a Project Scientist in my lab and is now a Professor at the … Continue reading

Posted in Lab Publications | Tagged , , | Leave a comment

New paper from Eisen lab: Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes KMG-I project

A new paper of possible interest discussing one of the new phases of the GEBA Genomic Encyclopedia of Bacteria and Archaea project. Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes KMG-I project | Kyrpides | Standards in … Continue reading

Posted in Lab Publications | Leave a comment

New paper from some in the Eisen lab: phylogeny driven sequencing of cyanobacteria

Quick post here.  This paper came out a few months ago but it was not freely available so I did not write about it (it is in PNAS but was not published with the PNAS Open Option — not my … Continue reading

Posted in Lab Publications | Tagged , , , , , | Leave a comment

New papers from people in the lab …

A lot of new papers from people in the lab in the last month or so.  See below for details of some of them: PLOS ONE: Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices from Jenna Morgan Lang, Aaron … Continue reading

Posted in Lab Publications | Leave a comment

Email from Biomed Central pointing to ways to get #altmetrics for recent sFAMS paper

Just received from Biomed Central and thought some people might be interested in some of the ways they try to help you gather metrics about your papers. Dear Prof Eisen, We thought you might be interested to know how many … Continue reading

Posted in Lab Publications | Tagged , , | Leave a comment

New paper: MicrobeDB: a locally maintainable database of microbial genomic sequences

New paper out involving the lab.  The lead author is Morgan Langille, who was a post doc in the lab and is now at Dalhausie Dalhousie University.  The paper describes a tool for creation and maintenance of a local genome sequence … Continue reading

Posted in Lab Publications | Leave a comment

New paper from lab: Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila

A new paper in which the lab was involved has been published recently (just found it though it is not in Pubmed yet): Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophil a.  It was a collaboration between Kathy Collins, … Continue reading

Posted in Lab Publications | Leave a comment