Jonathan Eisen's Lab
All microbes, all the time
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    • Affiliations
      • UC Davis Genome Center
      • UC Davis Dept. of Evolution & Ecology
      • UC Davis Center for Population Biology
      • UC Davis Dept. of Medical Microbiology & Immunology
      • DOE Joint Genome Institute
      • UC Davis Population Biology Graduate Group
      • UC Davis Microbiology Graduate Group
      • PLoS Biology
      • PLoS Hub in Biodiversity
      • UC Davis Microbiome Core Facility
    • Disclosures
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    • Questions for Jonathan Eisen (Advice, Background, Projects, etc)
  • People
    • Jonathan Eisen
      • Jonathan Eisen Bio
      • Eisen’s Google Profile/Plus
      • Eisen’s Tree of Life Blog
      • Eisen on Linked In
      • Eisen’s Mendeley Page
      • Contact information
    • Staff, Post Docs, etc
      • Dongying Wu
      • John Zhang
      • Guillaume Jospin
      • David Coil
      • Holly Bik
      • Jenna Morgan Lang
    • PhD Students
      • Russell Neches
      • Elizabeth (aka Lizzy) Wilbanks
      • Marisano James
      • Ladan Doroud
      • Srijak Bhatnagar
    • Undergrads
      • Zachary Bendiks
      • Amanda Diep
      • Jessica Doctor
      • Jennifer Flanagan
      • Jonathon Lo
      • Hannah Holland-Moritz
    • Past Members of the Lab
      • Aaron Darling
    • Pictures
  • Projects
    • Major research areas
    • Major current projects
      • Genomic Encyclopedia of Bacteria and Archaea (GEBA)
      • microbiology of the Built Environment Network (microBEnet)
      • Corn Microbiome
      • DOG Mouth Microbiome
      • Metagenomic Phylogenetics
      • Halophilic Archaea Phylogenomics
    • Other Current Projects
      • Chemosynthetic symbioses
      • Earth Microbiome Project
      • Mt. Erebus microbial biogeography
      • Rice Microbiome
      • Helicobacter associated microbes
      • Drosophila microbiome
      • The Eisenome Project
    • Past Major Projects
      • iSEEM (Moore Foundation)
      • Bacterial Phylogenomics aTOL (NSF)
      • DARPA Fundamental Laws of Biology (FUNBIO)
      • Glassy-winged sharpshooter symbionts
      • Tetrahymena genomics (NSF & NIH)
      • Wolbachia genomics (NIH)
    • Past Collaborations
      • Sargasso Sea & Global Ocean Survey Metagenomics
      • Arabidopsis genome
      • Plasmodium falciparum genome
      • Early DOE Microbial Genomes
      • Early Microbial Pathogen genomes
      • Project: Haloferax volcanii genome
      • Project: Nautilia symbionts
  • News & Social Media
    • The Eisen Lab in the News
    • Eisen’s Tree of Life Blog
    • microBEnet Blog
    • Eisen Lab Blog
    • Eisen’s Twitter
    • Eisen Lab on Twitter
    • Lab Meeting Schedule
    • Seminars of Interest Around Davis
  • Publications
    • Full List of Eisen Publications
    • Eisen’s Pubs on Mendeley
    • Eisen Pubs on Google Scholar
    • Eisen Lab Publications on Mendeley
    • Evolution Textbook
    • Eisen Pubs on Pubmed
  • Teaching & Outreach
    • Full List of Talks and Presentations
    • Jonathan Eisen’s TED Talk on “Meet Your Microbes”
    • Some details on my TedMed talk
    • PhD Comics Animation on “Open Access” w/ J. Eisen
    • Jonathan Eisen Talks on Youtube
    • Eisen talks on Slideshare
    • Compass Summit Talk on Dark Matter of Biology
    • “What is Open Access Publishing?” talk
    • Eisen Interview on Mendelspod
    • Teaching and Outreach Notes
    • Bodega Applied Phylogenetics Course
  • Software
    • A5 Assembly Pipeline
    • AMPHORA
    • APIS
    • Biotorrents
    • ComboDB
    • CompostBin
    • Mauve Assembly Metrics
    • PhyloSift
    • phylOTU
    • Pique
    • STAP
    • OTU Hunter
    • WATERS
    • Zorro
  • Data
    • Eisen Lab Data at Figshare
    • Sifting Families: SFams
    • Darwin’s Finch Genome Data at Figshare
    • Data from Morgan et al. metagenomic simulation
    • Haloarchaea Data from Lynch et al. 2012
    • Data from Wu et al. 2011 Stalking 4th Domain paper
  • Eisen Lab Blog
    • Lab Meeting
    • Lab Publication Posts
    • Undergraduate Aquarium Project
    • Undergrad Genome Project
    • Metagenomics Discussion Group
    • Seminar Postings
    • UC Davis Courses
  • Misc.
    • Papers I have served as editor for
    • Project: ISS Microbiome collaboration with Science Cheerleaders
    • Darwin’s Finch Genome Sequencing Notes
    • Some notes on Big Data
    • Old Web Site via Dropbox
    • Eisen Old TIGR Web Site
    • Eisen Twitter archive
  • Humor
    • World Anti Brain Doping Authority April 1, 2008
    • Secret of the Ocean-Venter April 1, 2008
    • Collins responds to Venter April 1, 2008
    • Thymineless Death Society tribute to Phil Hanawalt

Category Archives: Personal-Eisen

Newer posts →

Waaaaaaaaaaaaaaaaaaahhhhhhhhhhhhhhhhhhhh (again)

Posted on October 6, 2011 by Jonathan Eisen
Posted in Personal-Eisen | Leave a comment

Waaaaaaaaaaaaaahhhhhhhhh

Posted on October 6, 2011 by Jonathan Eisen
Posted in Personal-Eisen | Leave a comment

Burgess Sale vs. Shale

Posted on October 2, 2011 by Jonathan Eisen

Every time I see this ad I clipped out twenty years ago, I think of Stephen Jay Gould and the Burgess Shale.  I sent it to him when I was a grad. student and would see this ad in the … Continue reading →

Posted in Personal-Eisen | Leave a comment

Ooh — all three at once #baseball

Posted on September 29, 2011 by Jonathan Eisen
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I love MLBs picture in picture function

Posted on September 29, 2011 by Jonathan Eisen
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OK I now officially love BioITWorld; on the cover, in my #Redsox #PLoS1 shirt, called “Ace Pitcher”

Posted on September 19, 2011 by Jonathan Eisen
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Ooh got my special referee coin #DavisCA

Posted on September 9, 2011 by Jonathan Eisen
Posted in Personal-Eisen | Leave a comment

Inside the secret #DavisCA AYSO training facility #RefereesRUS

Posted on September 9, 2011 by Jonathan Eisen
Posted in Personal-Eisen | Leave a comment
Newer posts →
  • RSS Lab Blog

    • Citizen (Funded) Science jennomics
    • No lab meeting May 21st 2013 gjospin
  • RSS microBEnet blog

    • Nature news on the hospital microbiome project #microBEnet Jonathan Eisen
    • Architect at ASM, part 2 – more notes from a building ecology perspective Hal Levin
  • RSS The Tree of Life

    • Worth a look: PhyloFacts FAT-CAT web server: ortholog identification & function prediction
    • Story behind the paper: from Jeremy Barr on "Bacteriophage and mucus. Two unlikely entities, or an exceptional symbiosis? "
  • RSS Phylosift

    • PhyloSift Poster at #asm2013
  • Jonathan Eisen on Twitter

    • RT @ascollins: Screw the NBA & NHL -> Microbial Playoffs… In Spaaaace! #microBEnet microbe.net/microbial-play… 10 hours ago
  • EisenLab Tweets
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    Conference Notes Lab Meeting Lab Publications Misc. Personal-Eisen Seminars of Interest Around Davis UC Davis Undergraduate Aquarium Project Undergraduate Genome Project Workshops and Courses Outside Davis
  • Jonathan Eisen’s TED Talk on “Meet your microbes”

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