Jonathan Eisen Bio

Bio

Jonathan A. Eisen, Ph.D., is a Professor at U. C. Davis. His lab is in the UC Davis Genome Center and he hold appointments in the Department of Medical Microbiology and Immunology in the School of Medicine and the Department of Evolution and Ecology in the College of Biological Sciences. In addition he holds an Adjunct appointment at the Department of Energy Joint Genome Institutein Walnut Creek, CA.

His research focuses on the mechanisms underlying the origin of novelty (how new processes and functions originate). Most of his work involves the use of high-throughput DNA sequencing methods to characterize microbes and then the use and development of computational methods to analyze this type of data. In particular, his computational work has focused on integrating evolutionary analysis with genome analysis—so-called phylogenomics.

Previously, he applied this phylogenomic approach to cultured organisms, such as those from extreme environments and those with key properties as they relate to evolution or global climate cycles. Currently he is using sequencing and phylogenomic methods mostly to study microbes directly in their natural habitats (i.e., without culturing). In particular he focuses on how communities of microbes interact with each other or with plant and animal hosts to create new functions. Dr. Eisen has also coordinated one of the largest microbial genome sequencing projects to date—the “Genomic Encyclopedia of Bacteria and Archaea” being done at the Department of Energy (DOE) Joint Genome Institute.

In addition to his research, Dr. Eisen is also a vocal advocate for “open science” especially “open access” to scientific publications and is the Academic Editor-in-Chief ofPLoS Biology. He is also an active and award-winning science blogger/microblogger (e.g., see his Tree of Life blog here). For recent news see http://twitter.com/phylogenomics

Prior to moving to UC Davis Dr. Eisen was on the Faculty at The Institute for Genomic Research (TIGR) and helped pioneer many types of “phylogenomic” studies integrating evolutionary analyses and genomics.  While there he held an Adjunct Appointment in theBiology Department at the Johns Hopkins University.

At TIGR Dr. Eisen worked on multiple projects at the interface of evolution and genomics including leading multiple sequencing projects for phylogenetically novel organisms.  In addition he worked on developing and applying “phylogenomic” methods for the study of the origin of novelty in microbes.

Dr. Eisen earned his PhD in 1998 from Stanford University in Biological Sciences where he worked on the evolution of DNA repair processes in the lab of studied with Prof. Philip Hanawalt.   His work there included studies of the evolution of DNA repair gene families, experimental studies of DNA repair in Haloferax volcano and the development of phylogenomic approaches to studying microbes.

Dr. Eisen earned his undergraduate degree in Biology from Harvard College in 1990.  While there, and as a technician for a year after graduating,  he conducted research on the symbiosis in between chemosynthetic bacteria and marine invertebrates in the lab of Prof. Colleen Cavanaugh on chemosynthetic symbioses.

Shorter Bio

Jonathan Eisen is a Full Professor at the University of California, Davis with appointments in the School of Medicine and the College of Biological Sciences.

Dr. Eisen’s research focuses on communities of microbes and how they provide new functions – to each other or to a host.  His study systems have included boiling acid pools, surface ocean waters, agents of many diseases, and the microbial ecosystems found in and on plants and animals.  He is also coordinating the largest microbial sequencing project to date – a Genomic Encyclopedia – being done at the DOE Joint Genome Institute where he holds an Adjunct Appointment.  His overarching goal in all of his research is to create a “Field Guide to the Microbes” much as exists for birds and trees.

In addition to his research, Dr. Eisen is a vocal advocate for “open science” especially “open access” to scientific publications and is the Academic Editor-in-Chief of PLoS Biology.  He is also an active and award-winning blogger and microblogger.

Prior to moving to UC Davis he was on the faculty of The Institute for Genomic Research in Rockville, Maryland and held an Adjunct Appointment at the Johns Hopkins University. He earned his Ph.D. in Biological Sciences from Stanford University and his undergraduate degree in Biology from Harvard College.

Even shorter

Jonathan Eisen is a Full Professor at the University of California, Davis with appointments in the School of Medicine and the College of Biological Sciences.

Dr. Eisen’s research focuses on communities of microbes and how they provide new functions – to each other or to a host.  His study systems have included boiling acid pools, surface ocean waters, agents of many diseases, and the microbial ecosystems in and on plants and animals.  He is also coordinating the largest microbial sequencing project to date – a Genomic Encyclopedia – being done at the DOE Joint Genome Institute where he holds an Adjunct Appointment.  His overarching goal in his research is to create a “Field Guide to the Microbes” much as exists for birds or trees.

In addition to his research, Dr. Eisen is a vocal advocate for “open science” especially “open access” to scientific publications and is the Academic Editor-in-Chief of PLoS Biology.  He is also an active and award-winning blogger and science communicator.

Prior to UC Davis he was on the faculty of The Institute for Genomic Research and held an Adjunct Appointment at the Johns Hopkins University. He earned a Ph.D. in Biological Sciences from Stanford University and an A.B. in Biology from Harvard College.

3 Responses to Jonathan Eisen Bio

  1. Pingback: MicroBioBlitz | jennomics

  2. Pingback: Behind the scenes in a 650-student biology course | The Prospective Prof

  3. Pingback: A Case for Evolution in (Medical) Education | ARIELLE FOGEL

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out / Change )

Twitter picture

You are commenting using your Twitter account. Log Out / Change )

Facebook photo

You are commenting using your Facebook account. Log Out / Change )

Google+ photo

You are commenting using your Google+ account. Log Out / Change )

Connecting to %s